PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G046100.1
Common NameB456_007G046100, LOC105802144
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 219aa    MW: 24317.4 Da    PI: 6.2474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G046100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1899149255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+     +r++lg+f+t  +Aaka++ a+ k++g
  Gorai.007G046100.1  99 HYRGVRRRP-WGKFAAEIRDPTRK--GRRVWLGTFDTDVDAAKAYDCAAFKMRG 149
                         7********.**********8542..4**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-3198158IPR001471AP2/ERF domain
PfamPF008471.5E-1399149IPR001471AP2/ERF domain
SMARTSM003803.7E-3699163IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2299158IPR016177DNA-binding domain
PROSITE profilePS5103224.2599157IPR001471AP2/ERF domain
PRINTSPR003674.1E-13100111IPR001471AP2/ERF domain
CDDcd000186.87E-24107157No hitNo description
PRINTSPR003674.1E-13139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTSVEESTTL DFIHQHLLGD FPSADAFISS LDFGLSQLQN YQVPELYQPH SPVSDPNCGI  60
PEIFSYDVKP GVVELESPSV FISGSKVEQK VLVCEERRHY RGVRRRPWGK FAAEIRDPTR  120
KGRRVWLGTF DTDVDAAKAY DCAAFKMRGQ KAILNFPLEA GQATPPATTC RKRGKEKGNK  180
SPESDVMSLV SSELASAVVK EEEDKPIDGQ NITCHHYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2998158161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489066.11e-164PREDICTED: ethylene-responsive transcription factor ERF107-like
TrEMBLA0A0D2P3001e-164A0A0D2P300_G
STRINGPOPTR_0003s15060.12e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.18e-41ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]